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Welcome to biowww blog

April 1st, 2005 by Administrator

Biowww blogger is the place where you can share your blog articles with other bioscience researchers. To become a bioblogger is simple, just sign up a free account by following instructions given in registration page and you are all set for a brand new personal blog. Write your blog is also very simple and you are free to decide if the post should be kept private or public. You are in command of your own content.

Biowww blog is dedicated to promoting free discussions on intersting topics of bioscience research. Join us and become a new bioblogger today.

Sign up new blogger account <<

A brief introduction of biowww blogger

April 2nd, 2005 by biowww net

This is a brief introduction on how to use the blog to post and comment.

Step 1. Register your account. You will need a valid email address since the machine generated password will be send via email.

Step 2. Login to you account by clicking login link on the meta sidebar section.

Step 3. Chose the write menu and write post submenu as shown bellow and start to write your blog article. The default post category is “my blog” but you can chose multiple categories for your post. You can save your post as draft or keep it priviate, or simply publish it. If you are experienced blog user, you can also use advanced editing option to write your article.

Step 4. To prevent comment spam, each comment has to be approved by original author of the article (blogger). To approve comments, login and chose comment submenu to approve or disapprove the comment.

That’s it. Enjoy blogging.

A review on making transgenic model using novel approaches like RNAi

April 4th, 2005 by bioblogger

History and new design strateges for making better transgenic models.

Making better transgenic models: conditional, temporal, and spatial approaches.
Ristevski S
Mol Biotechnol. 2005 Feb ; 29(2): 153-63

Over the last decade transgenic mouse models have become a common experimental tool for unraveling gene function. During this time there has been a growing expectation that transgenes resemble the in vivo state as much as possible. To this end, a preference away from heterologous promoters has emerged, and transgene constructs often utilize the endogenous promoter and gene sequences in BAC, PAC and YAC form without the addition of selectable markers, or at least their subsequent removal. There has been a trend toward controlled integration by homologous recombination, either at a characterized chromosomal localization or in some cases within the allele of interest. Markers such as green fluorescent protein (GFP), beta-galactosidase (LacZ), and alkaline phosphatase (AP) continue to be useful to trace transgenic cells, or transgene expression. The development of technologies such as RNA interference (RNAi), are introducing new ways of using transgenic models. Future developments in RNAi technology may revolutionize tissue specific inactivation of gene function, without the requirement of generating conditionally targeted mice and tissue specific recombinase mice. Transgenic models are biological tools that aid discovery. Overall, the main consideration in the generation of transgenic models is that they are bona fide biological models that best impart the disease model or biological function of the gene that they represent. The main consideration is to make the best model for the biological question at heart and this review aims to simplify that task somewhat. Here we take a historical perspective on the development of transgenic models, with many of the important considerations to be made in design and development along the way.

List of human house keeping genes

April 4th, 2005 by bioblogger

In this short review authors summarized use of human house keeping gene in gene expression study.

Human housekeeping genes are compact.
Eisenberg E, Levanon EY
Trends Genet. 2003 Jul ; 19(7): 362-5

This web page lists all popular house keeping genes based on the review given above and a paper by Su et al. It’s a good reference for labs studying human gene expressions using real-time PCR. (from Compugen)

Each gene name/description is followed by its geometric average expression level according to the data published by Su et al. Genes designated by asterisk are in popular use as reference in real-time PCR.

>>List of housekeeping genes

Blog the pubmed abstracts

April 5th, 2005 by biowww net

Now you can blog any abstract in pubmed using free service provided by Hubmed.org. Apart from the full functionality of NCBI Pubmed, the hubmed allows you to write blog article to cite and remote comment on the abstract.

It’s perfect for an online journal club! How does it work? well it’s quite simple. When you write your blog article citing the pubmed abstract in Hubmed database you give a backtrack URI linking to the abstract’s pubmed ID. Your blog software will then ping the remote Hubmed server to let it know someone has written comment on that abastract. The remote Hubmed server will then attempt to fetch the comment, parse it and store it in its database. So lets assume ten people have written comments on a recently published hot paper and have given backtrack link to Hubmed, it will store excerpt of all remote comments in its database and comments will be shown as an extra reference tag for the abstract. This is a wonderful way of creating virtual journal club on the internet.

hubmed references

Some features of Hubmed are quoted bellow.

RSS feeds of literature queries - updated daily.
Drag the XML button from a page of search results into your newsreader:
NewzCrawler (Windows), NetNewsWire (OS X) or Amphetadesk (cross-platform).

Export checked abstracts in RIS format.
Unzip this import filter into Endnote’s Filters folder for direct import into Endnote.
Install the RIS Export plugin for direct import into ProCite, RefMan and older versions of Endnote.

HubMed bookmarklet - drag into your toolbar.

TrackBack-enabled remote comments.

Citation Matcher

Bioinformatics in the Post-Genomic Era

April 7th, 2005 by bioblogger

A review based on Jeff Augen’s Bioinformatics in the Post-Genomic Era posted in Slashdot. There is a very active discussion going on with more than 100 comments.

Take a look at Bioinformatics in the Post-Genomic Era.

Bioinformatics in the Post-Genomic Era
author: Jeff Augen
pages: 388
publisher: Addison-Wesley Longman

Latest bioscience job list and bioinformatics new articles

April 8th, 2005 by biowww net

New jobs and positions in bioscience, biotech and pharmaceutical companies. Sources are from Nature jobs, bioinformatics.ca, Yahoo hot jobs bioscience section etc. Updated regularly on daily basis.

Latest bioscience job list

Bioinformatics and microarray articles recommended by users through citiUlike

Latest issues from journals with highest impact factors

April 10th, 2005 by biowww net

Latest issue of six journals with highest impact factors. It is compiled with Bioinformatics aggregated RSS feeds (Barf).

Journals include Science, Nature, Cell, Nature genetics, Genes and development, MCB.

>> Latest issues from top 6 journals

The Biomolecule Naming Service (BNS)

April 11th, 2005 by bioblogger

The Biomolecule Naming Service (BNS) is an LDAP-based directory of gene and protein information derived from NCBI’s LocusLink database. The main purpose of BNS is to quickly and easily convert between different name and identifier schemes commonly used for specifying gene and protein sequences.

The Biomolecule Naming Service (BNS)

It is useful for ontology based text mining of biomedical literatures.

Nature review web focus on RNA interference

April 13th, 2005 by bioblogger

This is a selection of recently published Reviews, Perspectives and Highlights on RNA interference (RNAi), one of the hottest new topics in bioscience. >> Nature review web focus on RNA interference